Journal of Microbiology

The Microbiological Society of Korea (한국미생물학회)
권호 표지

Phylogenetic Analysis of Trichaptum Based on the RFLP of PCR-Amplified DNAs

  • Published : 1996.12.01
Download PDF
⟨ Previous Next ⟩

Abstract

To infer phylogenetic relationships between species of Trichaptum (Polyporaceae), RFLP analyses of PCR-amplified DNAs were accomplished. Regions coding for ITSs of nuclear SSU rRNA genes and for mitochondrial SSU rRNA genes from thirteen strains of four Trichaptum species (T. abietinum, T. biforme, T. fusco-violaceum, and T. laricinum) were amplified and digested with eight restriction enzymes. All the fragmentation patterns were characterized and coded as 0/1 for the absence/presence of fragments. A phylogenetic tree based on the combined data sets was constructed using the Dollo parsimony method. While every two strains of T. abietinum, T. biforme, T. fusco-violaceum, and T. laricinum formed an independent group, the other strains of T. abietimum and T. fusco-violaceum made mixed groupings among compared strains. It is inferred that T. abietinum and T. fusco-violaceum have more variations, possibly geographic or physiological ones, than other species in the genus.

Keywords

References

  1. Mushrooms demystified Arora, D.
  2. Mycol. Res. v.100 DNA polymorphism in morels: PCR/RFLP analysis of the ribosomal DNA spacers and microsatellite-primed PCR Buscot, F.;D. Wipf;C.D. Battista;J. Munch;B. Botton;F. Martin
  3. Syst. Zool. v.34 Cladistic analysis of restriction endonuclease cleavage maps within a maximum likelihood framework DeBry, R.W.;N.A. Slade
  4. Evolution v.46 Biogeography of new world Taigadwelling Micortus (Mammalia: Arvicolidae): A hypothesis test that accounts for phylogenetic uncertainty DeBry, R.W.
  5. North American polypores v.2 Gilbertson, R.L.;L. Ryvarden
  6. Mycol. Res. v.100 Phylogenetic studies in Peniophora Hallenberg, N.;E. Larsson;M. Mahlapuu
  7. Mycol. Res. v.98 Typing truffle species by PCR amplification of the ribosomal DNA spacers Henrion, B.;G. Chevalier;F. Martin
  8. Proc. Coll. Natur. Sci. v.16 Fungal flora of Kwanak Mountain Jung, H.S.
  9. Mycotaxon v.15 A reevaluation of the basidiomycetes based upon septal and basidial structures Khan, S.R.;J.W. Kimbrough
  10. J. Microbiology v.34 Phylogenetic study of Trichaptum species based on the RFLP analysis of mitochondrial DNA Kim, M.;H.S. Jung
  11. Cladistics-A practical course in systematics Tree-building techniques Kitching, I.J.;P.L. Forey(ed.);C.J. Humphries(ed.);I.J. Kitching(ed.);R.W. Scotland(ed.);D.J. Siebert(ed.);D.M. Williams(ed.)
  12. Can. J. Bot. v.45 Pairing incompatibility and other distinctions among Hirschioporus abietinus, H. fusco-violaceus, and H. laricinus Macrae, R.
  13. Mem. N.Y. Bot. Gard. v.28 Incompatibility factors in Polyporus abietinus, their numbers and distributions Magasi, L.P.
  14. Developmental biology of higher fungi. The challenge of the dolipore/parenthosome septum Moore, R.T.;D. Moore(ed.);L.A. Casselton(ed.);D.A. Wood(ed.);J.C. Frankland(ed.)
  15. Mycol. Res. v.100 Identification of nematode-trapping fungi using RFLP analysis of the PCR-amplified ITS region of ribosomal DNA Persson, Y.;S. Erland;H. Jansson
  16. Lett. Appl. Microbiol. v.1 Rapid preparation of DNA from filamentous fungi Raeder, U.;P. Broda
  17. Genera of polypores: Nomenclature and taxonomy Ryvarden, L.
  18. European polypores v.2 Ryvarden, L.;R.L. Gilbertson
  19. PAUP; Phylogenetic analysis using parsimony (version 3.1.1.) Swofford, D.J.
  20. Molecular systematics Phylogenetic reconstruction Swofford, D.;G. Olsen;D.M. Hillis(ed.);C. Moritz(ed.)
  21. Can. J. Microbiol. v.24 Ultrastructure of the dolipore septum in Hirschioporus pargamenus(Polyporaceae) Traquair, J.A.;W.E. McKeen
  22. PCR protocols:A guide to methods and amplification Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics White, T.J.;T. Bruns;S. Lee;J. Taylor;M.A. Innis(ed.);D.H. Gelfand(ed.);J.J. Sninsky(ed.);T.J. White(ed.)