Genetic and Phenotypic Diversity of Dichlorprop-Degrading Bacteria Isolated from Soils

  • Park, Hae-Dong (School of Agricultural Biotechnology, Seoul National University) ;
  • Ka, Jong-Ok (School of Agricultural Biotechnology, Seoul National University)
  • Published : 2003.03.01

Abstract

Nine dichlorprop-degrading bacteria and three pairs of bacteria showing syntrophic metabolism of the herbicide were isolated from soils, and their genetic and phenotypic characteristics were investigated. Analysis of 16S rDNA sequences indicated that the isolates were related to members of the genera, Sphingomonas, Herbaspirillum, and Bradyrhizobium. Twelve different chromosomal DNA patterns were obtained by polymerase-chain-reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences from the 15 isolates. The isolates were able to utilize the herbicide dichlorprop as a sole source of carbon and energy and their dichlorprop derogative pathways were induced by the presence of dichlorprop. Most of the isolates and syntrophic pairs were able to degrade both (R)- and (S)-dichlorprop, but strain DP522 exhibited enantioselective degradation of (S)-dichlorprop. The isolates degraded 2,4-dichlorophenoxyacetic acid, 2-methyl-4-chlorophenoxyacetic acid , and mecoprop, in addition to dichlorprop. Oxygen uptake experiments indicated that most of the isolates degraded dichlorprop through 2,4-dichlorophenol.

Keywords

References

  1. The Chemistry and Mode of Action of Plant Growth Substances On the effects of para-substitution in some plant growth regulators with phenyl nuclei Aberg, B.;R.L. Wain(Ed.);F. Wightman(Ed.)
  2. Adv. Appl. Microbiol. v.7 Biodegradation: problems of molecular recalcitrance and microbial fallibility Alexander, M. https://doi.org/10.1016/S0065-2164(08)70383-6
  3. J. Agric. Food Chem. v.9 Effect of chemical structure on microbial decomposition of aromatic herbicides Alexander, M.;M.I.H. Aleem https://doi.org/10.1021/jf60113a012
  4. J. Mol. Biol. v.215 Basic local alignment tool Altschul, S.F.;W. Gish;W. Miller;E.W. Myers;D.J. Lipman https://doi.org/10.1016/S0022-2836(05)80360-2
  5. J. Environ. Qual. v.16 Effects of long-term 2,4-D field applications on soil biochemical processes Biederbeck, V.O.;C.A. Campbell;A.E. Smith https://doi.org/10.2134/jeq1987.00472425001600030013x
  6. FEMS Microbiol. Lett. v.138 Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns Berthelet, M.;L.G. Whyte;C.W. Greer https://doi.org/10.1111/j.1574-6968.1996.tb08128.x
  7. J. Microbiol. v.36 no.4 Isolation and characteriazation of 2,4-dichlorophenoxyacetic acid-degrading bacteria from paddy soils Chung, M.J.;J.O. Ka.
  8. Plasmids Methods for General and Molecular Bacteriology Crosa, J.H.;M.E. Tolmasky;L.A. Actis;S. Falkow;P. Gerhardt(ed.);R.G.E. Murray(ed.);W.A. Wood(ed.);N. R. Krieg(ed.)
  9. Appl. Environ. Microbiol. v.58 Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium melioti isolates and other soil bacteria de Bruijn, F.J.
  10. J. Bacteriol v.161 Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4) Don, R.H.;A.J. Weightman;H.-J. Knackmuss;K.N. Timmis
  11. Soil Biol. Biochem. v.5 Laboratory incubation studies of chlorophenoxyacetic acids in chernozemic soils Foster, R.K.;R.B. Mckercher https://doi.org/10.1016/0038-0717(73)90081-3
  12. Chemosphere v.24 Degradation of the herbicide mecoprop in an aerobic aquifer determined by laboratory batch studies Heron, G.;T.H. Christensen https://doi.org/10.1016/0045-6535(92)90211-9
  13. Appl. Microbiol. Biotechnol. v.33 Isolation and characterization of a 2-(2,4-dichlorophenoxy)propionic acid-degrading soil bacterium Horvath, M.;G. Ditzelmuller;M. Loidl;F. Streichsbier
  14. J. Bacteriol v.180 Novel division level bacterial diversity in a Yellowstone hot spring Hugenholtz, P.;C. Pitulle;K.L. Hershberger;N.R. Pace
  15. Appl.Environ. Microbiol v.60 Genetic and phenotypic diversity of 2,4-dicahlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils Ka, J.O.;W.E. Holben;J.M. Tiedje
  16. J. Bacteriol v.176 Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer Ka, J.O.;J.M. Tiedje https://doi.org/10.1128/jb.176.17.5284-5289.1994
  17. J. Bacteriol v.145 Rapid procedure for detection and isolation of large and small plasmids Kado, C.I.;S.T. Liu
  18. Appl. Environ. Microbiol. v.63 Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria Kamagata, Y.;R.A. Fulthorpe;K. Tamura;H. Takami;L.J. Forney;J.M. Tiedje
  19. 16S/23S rRNA sequencing Nucleic Acid Techniques in Bacterial Systematics Lane, D.J.;E. Stackebrandt(Ed.);M. Goodfellow (Ed.)
  20. Appl. Environ. Microbiol. v.49 Degradation of the herbicide mecoprop [2-(2-methyl-4-chlorophenoxy)propionic acid] by a synergistic microbial community Lappin, H.M.;M.P. Greaves;J.H. Slater
  21. Can. J. Microbiol v.13 Phenols as intermediates in the decomposition of phenoxyacetates by an Arthrobacter species Loos, M.A.;R.N. Roberts;M. Alexander https://doi.org/10.1139/m67-090
  22. Soil. Biol. Biochem. v.1 Phenoxy herbicide degradation in soils: quantitative studies of 2,4-D and MCPA-degrading microbial polulations Loos, M.A.;I.F.Schlosser;W.R. Mapham
  23. J. Biol. Chem. v.193 Protein measurement with the Folin phenol reagent Lowry, O.H.;H.J. Rosebrough;A.L. Farr;R.J. Randall
  24. Nucleic Acids Res. v.28 no.1 The RDP (Ribosomal Database Project) continues Maidak, B.L.;J.R. Cole;T.G. Lilburn;C.T. Parker Jr;P.R. Saxman;J. M. Strecwick;G.M. Garrity;B. Li;G.J. Olsen;S. Pramanik;T.M. Schmidt;J.M. Tiedje https://doi.org/10.1093/nar/28.1.173
  25. Environ. Sci. Technol. v.31 Conversion reactions of various phenoxyalkanoic acid herbicides in soil. 1. Enantiomerization and enantioselective degradation of the chiral 2-phenoxypropionic acid herbicides Muller, M.D.;H. Buser https://doi.org/10.1021/es960782p
  26. Plasmids of Medical, Environmental and Commercial Importance Evolution and spread of pesticide degrading ability among soil microorganisms Pemberton, J.M.;B. Corney;R.H. Don.;K.N. Timmis;A. Puhler(eds.)
  27. Arch. Microbiol. v.150 Metabolism of 2,4-dichlorophenoxyacetic acid, 4-chloro-2-methylphenoxyacetic acid and 2-methylphenoxyacetic acid by Alcaligenes eutrophus J MP134 Pieper, D.H.;W. Reineke;K.-H. Engesser;H.-J. Knackmuss https://doi.org/10.1007/BF00409724
  28. J. Environ. Qual. v.20 Effects of long-term 2,4-D and MCPA field applications on the soil breakdown of 2,4-D, MCPA, mecoprop, and 2,4,5-T Smith, A.E.;A.J. Aubin https://doi.org/10.2134/jeq1991.00472425002000020016x
  29. Weed Res. v.21 Relative persistence of MCPA, MCPB and mecoprop in Saskatchewan soils, and the identification of MCPA in MCPB-treated soils Smith, A.E.;B.J. Hayden https://doi.org/10.1111/j.1365-3180.1981.tb00114.x
  30. FEMS Microbiol. Ecol. v.14 Enantioselective degradation of the herbicide mecoprop [2-(2-methl-4-chlorophenoxy)propionic acid] by mixed and pure bacterial cultures Tett, V.A.;A.J. Willetts;H.M. Lappin-Scott https://doi.org/10.1111/j.1574-6941.1994.tb00105.x
  31. Weed Res. v.15 The effect of repeated applications of 2,4-D and MCPA on their breakdown in soil Torstensson, N.T.L.;J. Stark;B. Goransson https://doi.org/10.1111/j.1365-3180.1975.tb01116.x
  32. FEMS Microbiol. Ecol. v.20 The metabolic pathway of 2,4-dichlorophenoxyacetic acid degradation involes different families of tfdA and tfdB genes according to PCR-RFLPanalysis Vallaeys, T.;R.R. Fulthorpe;A.M. Wright;G. Soulas https://doi.org/10.1111/j.1574-6941.1996.tb00315.x
  33. Methods Mol. Cell Biol. v.5 Genomic fingerprinting of bacteria using repetitive sequence-based polylmerase chain reaction Versalovic, J.;M. Schneider, F.J.;de Bruijn;J.R. Lupski
  34. Methods Microbiol v.21 Conjugation Willetts, N.S. https://doi.org/10.1016/S0580-9517(08)70070-9
  35. Appl. Environ. Microbiol. v.62 Complete microbial degradation of both enantiomers of the chiral herbicide mecoprop ((RS)-2-(-4-chloro-2-methylphenoxy) propionic acid) in an enantioselective manner by Sphingomonas herbicidovorans sp. nov Zipper, C.;K. Nickel;W. Angst;H.-P.E. Kohler