Purification and Characterization of Novel Bifunctional Xylanase, XynIII, Isolated from Aspergillus niger A-25

  • Chen Hong-Ge (College of Life Sciences, Henan Agricultural University) ;
  • Yan Xin (College of Life Sciences, Henan Agricultural University) ;
  • Liu Xin-Yu (College of Life Sciences, Henan Agricultural University) ;
  • Wang Ming-Dao (College of Life Sciences, Henan Agricultural University) ;
  • Huang Hui-Min (College of Life Sciences, Henan Agricultural University) ;
  • Jia Xin-Cheng (College of Life Sciences, Henan Agricultural University) ;
  • Wang Jin-An (Laboratory of Catalysis and Materials, Superior School of Chemical Engineering and Industrial Extractives, National Polytechnic Institute)
  • Published : 2006.07.01

Abstract

Three types of xylanases (EC 3.2.1.8) were detected in the strain Aspergillus niger A-25, one of which, designated as XynIII, also displayed ${\beta}-(l,3-1,4)-glucanase$ (EC 3.2.1.73) activity, as determined by a zymogram analysis. XynIII was purified by ultrafiltration and ion-exchange chromatography methods. Its apparent molecular weight was about 27.9 kDa, as estimated by SDS-PAGE. The purified XynIII could hydrolyze birchwood xylan, oat spelt xylan, lichenin, and barley ${\beta}-glucan$, but not CMC, avicel cellulose, or soluble starch under the assay conditions in this study. The xylanase and ${\beta}-(l,3-1,4)-glucanase$ activities of XynIII both had a similar optimal pH and pH stability, as well as a similar optimal temperature and temperature stability. Moreover, the effects of metal ions on the two enzymatic activities were also similar. The overall hydrolytic rates of XynIII in different mixtures of xylan and lichenin coincided with those calculated using the Michaelis-Menten model when assuming the two substrates were competing for the same active site in the enzyme. Accordingly, the results indicated that XynIII is a novel bifunctional enzyme and its xylanase and ${\beta}-(l,3-1,4)-glucanase$ activities are catalyzed by the same active center.

Keywords

References

  1. Beguin, P. 1983. Detection of cellulase actrvity in polyacrylamide gels using Congo red-stained agar replicas. Anal. Biochem. 131: 333-336 https://doi.org/10.1016/0003-2697(83)90178-1
  2. Davis, B. J. 1964. Disc electrophoresis. II. Method and application to human serum. Ann. NY Acad. Sci. 121: 404-427 https://doi.org/10.1111/j.1749-6632.1964.tb14213.x
  3. Dixon, M. and E. C. Webb. 1964. Enzyme, 2nd Ed., pp. 84-87. Longmans, Green, and Co., Ltd, London
  4. Flint, H. J., J. Martin, C. A. McPherson, A. S. Daniel, and J. X. Zhang. 1993. A bifunctional enzyme with separate xylanase and $\beta$-(1,3-1,4)-glucanase domains, encoded by the XynD gene of Ruminococcus flavefaciens. J. Bacteriol. 175: 2943-2951 https://doi.org/10.1128/jb.175.10.2943-2951.1993
  5. Gibbs, M. D., D. J. Saul, E. Luthi, and P. L. Bergquist. 1992. The $\beta$-mannanase from 'Caldocellum saccharolyticum' is part of a multidomain enzyme. Appl. Environ. Microbiol. 58: 3864-3867
  6. Gomez de Segura, B. and M. Fevre. 1993. Purification and characterization of two 1,4-$\beta$-xylan endohydrolases from the rumen fungus Neocallimastix frontalis. Appl. Environ. Microbiol. 59: 3654-3660
  7. Haga, K., M. Kitaoka, Y. Kashiwagi, T. Sasaki, and H. Taniguchi. 1991. Purification and properties of a xylanase from Cellvibrio gilvus that hydrolyzes p-nitrophenyl cellooligosaccharides. Agric. Biol. Chem. 55: 1959-1967 https://doi.org/10.1271/bbb1961.55.1959
  8. Haros, M., C. M. Rosell, and C. Benedito. 2002. Improvement of flour quality through carbohydrases treatment during wheat tempering. J. Agric. Food Chem. 50: 4126-4130 https://doi.org/10.1021/jf020059k
  9. Hrmova, M. and G. Fincher. 2001. Plant enzyme structure. Explaining substrate specificity and the evolution of function. Plant Physiol. 125: 54-57 https://doi.org/10.1104/pp.125.1.54
  10. Jenkins, J., L. Lo Leggio, G. Harris, and R. Pickersgill. 1995. $\beta$-Glucosidase, $\beta$-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold $\beta$/$\alpha$ architecture and with two conserved glutamates near the carboxy-terminal ends of $\beta$-strands four and seven. FEBS Lett. 362: 281-285 https://doi.org/10.1016/0014-5793(95)00252-5
  11. John, M., B. Schmidt, and J. Schmidt. 1979. Purification and some properties of five endo-1,4-beta-D-xylanases and a beta-D-xylosidase-produced by a strain of Aspergillus niger. Can. J. Biochem. 57: 125-134 https://doi.org/10.1002/cjce.5450570201
  12. Kim, C. H. 1995. Characterization and substrate specificity of an endo-$\beta$-1,4-D-glucanase I (Avicelase I) from an extracellular multienzyme complex of Bacillus circulans. Appl. Environ. Microbiol. 61: 959-965
  13. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685 https://doi.org/10.1038/227680a0
  14. Lamed, R. and E. A. Bayer. 1988. The cellulosome concept: Exocellular enzyme reactor centers for efficient binding and cellulolysis, pp. 101-116. In J. P. Aubert, P. Beguin, and J. Millet (eds.), Biochemistry and Genetics of Cellulose Degradation. Academic Press, London
  15. Lin, L. L. and J. A. Thomson. 1991. An analysis of the extracellular xylanases and cellulases of Butyrivibrio fibrisolvens H17c. FEMS Microbiol. Lett. 84: 197-204 https://doi.org/10.1111/j.1574-6968.1991.tb04596.x
  16. Lo Leggio, L., J. Jenkins, G. W. Harris, and R. W. Pickersgill. 2000. X-ray crystallographic study of xylopentaose binding to Pseudomonas fluorescens xylanase 10A. Proteins 41: 362-373 https://doi.org/10.1002/1097-0134(20001115)41:3<362::AID-PROT80>3.0.CO;2-N
  17. Lo Leggio, L., S. Kalogiannis, K. Eckert, S. C. Teixeira, M. K. Bhat, C. Andrei, R. W. Pickersgill, and S. Larsen. 2001. Substrate specificity and sub site mobility in T. aurantiacus xylanase 10A. FEBS Lett. 509: 303-308 https://doi.org/10.1016/S0014-5793(01)03177-5
  18. Lowry, O. H., N. J. Risebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193: 265-275
  19. Mathlouthi, N., H. Juin, and M. Larbier. 2003. Effect of xylanase and beta-glucanase supplementation of wheat- or wheat- and barley-based diets on the performance of male turkeys. Br. Poult. Sci. 44: 291-298 https://doi.org/10.1080/0007166031000096498
  20. Meng, X., B. A. Slominski, C. M. Nyachoti, L. D. Campbell, and W. Guenter. 2005. Degradation of cell wall polysaccharides by combinations of carbohydrase enzymes and their effect on nutrient utilization and broiler chicken performance. Poult. Sci. 84: 37-47 https://doi.org/10.1093/ps/84.1.37
  21. Miller, G. L. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428 https://doi.org/10.1021/ac60147a030
  22. Omogbenigun, F. O., C. M. Nyachoti, and B. A. Slominski. 2004. Dietary supplementation with multienzyme preparations improves nutrient utilization and growth performance in weaned pigs. J. Anim. Sci. 82: 1053-1061
  23. Shikata, S. and K. Nsizawa. 1975. Purification and properties of an exo-cellulase component of novel type from Trichoderma miride. J. Biochem. (Tokyo) 78: 499-512 https://doi.org/10.1093/oxfordjournals.jbchem.a130934
  24. Wong, K. K., L. U. Tan, and J. N. Saddler. 1988. Multiplicity of $\beta$-1,4-xylanase in microorganisms: Functions and applications. Microbiol. Rev. 52: 305 -317
  25. Yang, R. J., S. Y. Xu, and Z. Wang. 2001. Purification and properties of xylanases from Pencillium corylopltilum. J. Wuxi Univ. Light Industry 20: 35-39 (in Chinese with English summary)
  26. Yu, P., J. J. McKinnon, and D. A. Christensen. 2005. Improving the nutritional value of oat hulls for ruminant animals with pretreatment of a multienzyme cocktail: In vitro studies. J. Anim. Sci. 83: 1133-1141
  27. Zhang, J. X. and H. J. Flint. 1992. A biftmctional xylanase encoded by the XynA gene of the rumen cellulolytic bacterium Ruminococcus flavefaciens 17 comprises two dissimilar domains linked by an asparagine/glutamine-rich sequence. Mol. Microbiol. 6: 1013-1023 https://doi.org/10.1111/j.1365-2958.1992.tb02167.x