CoMFA and CoMSIA Analysis on the Selective Fungicidal Activity of N-phenyl-D-phenylthionocarbamate Analogues against Resistant and Sensitive Gray Mold (Botrytis cinerea)

저항성 및 감수성 잿빛곰팡이병균(Botrytis cinerea)에 대한 N-Phenyl-O-phenylthionocarbamate 유도체들의 선택적인 살균활성에 관한 CoMFA 및 CoMSIA 분석

  • Soung, Min-Gyu (Peptron Inc. Rasearch Institute) ;
  • Sung, Nack-Do (Division of Applied Biology and Chemistry, College of Agriculture and Life Science, Chungnam National University)
  • 성민규 (펩트론(주) 중앙연구소) ;
  • 성낙도 (충남대학교 농업생명과학대학 응용생물화학부)
  • Published : 2007.09.30

Abstract

The relationships between three dimensional quantitative structure and activity relationships (3D-QSARs) for the selective fungicidal function between N-phenyl substituents of N-phenyl-O-phenyl-thionocarbamate derivatives analogues and their the fungicidal activities against resistant (RBC) and sensitive (SBC) gray mold (Botrytis cinerea) were studied quantitatively using CoMFA and CoMSIA methods. The statistical values of optimized CoMSIA (M7) model were better ($r^2$ & $q^2=CoMSIA{\gg}CoMFA$) than that of CoMFA (M5) model. And the factor influencing of the selective between the fungicidal activity against RBC and SBC was dependent on electrostatic field of CoMFA (M5) model. Therefore, it is predicted that, from the CoMSIA contour maps of CoMSIA (M7) model, the selectivity will be improved by the H-bond donor that is with negatively charged favored group at meta-position on the N-phenyl ring.

감수성(SBC) 및 저항성(RBC) 잿빛곰팡이병균(Botrytis cinerea)에 대한 N-phenyl-O-phenylthionocarbamate 유도체들의 선택적인 살균활성에 대한 3차원적인 구조와 활성과의 관계(3D-QSAR)를 CoMFA와 CoMSIA 방법으로 검토하였다 그 결과, 통계적으로 CoMFA 모델(M5)보다 CoMSIA 모델(M7)이 양호하였으며 살균활성의 선택성에 미치는 요소는 CoMSIA 모델(M7)의 정전기장에 의존적이었다. 그러므로 CoMSIA 모델(M7)의 등고도로부터 N-phenyl 고리의 meta-위치에 음하전을 띄는 수소결합 주게에 의하여 선택성이 개선될 것으로 예상되었다.

Keywords

References

  1. Alexander, W., B. Markus, C. T. Supuran, A. Scozzafava, C. A. Sotriffer and G. Klebe (2006) 3D QSAR selectivity analyses of carbonic anhydrase inhibitors: insights for the design of isozyme selective inhibitors. J. Chem Inf. Model. 46:2737 -2760 https://doi.org/10.1021/ci600298r
  2. Cramer, R. III., D. E. Patterson and J. D. Bunce (1988a) Comparative molecular field analysis (CoMFA), 1. Effect of shape on the binding of steroids to carrier proteins. J. Am Chem. Soc. 110:5959-5967 https://doi.org/10.1021/ja00226a005
  3. Etter, M. C. (1990) Encoding and decoding hydrogenbond patterns of organic compounds, Ace. Chem. Res. 23:120-126 https://doi.org/10.1021/ar00172a005
  4. Hamel, E. (1996) Antimitotic natural products and their interactions with tubulin. Med. Res. Rev. 16:207-231 https://doi.org/10.1002/(SICI)1098-1128(199603)16:2<207::AID-MED4>3.0.CO;2-4
  5. Hollomon, D. W., J. A Butters, H. Barker and L. Hall (1998) Fungal $\beta$-tubulin, Expressed as a fusion protein, binds benzimidazole and phenylcarbamate fungicides. Antimicrob. Agents Chemother. 42:2171-2173
  6. Kim, J. H., H. J. Park and B. Y. Park (2002) Inhibition of cholinesterase activity by carbamate insecticides. J. Environ. Sci. Health, 11(4):391 -397
  7. Klebe, G., U. Abraham and T. Mietzner. (1994) Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J. Med. Chem, 37:4130-4146 https://doi.org/10.1021/jm00050a010
  8. Kubinyi, H. (1993) 3D QSAR in Drug Design; Theory, Methods and Applications, ESCOM: Leiden
  9. Morejhon, L. C. and D. E. Foskett (1986) In Cell and Molecular Biology of the Cytoskeleton. Tubulins from plants, fungi and protists. (Shay, J. W. ed), Plenum Press, New York, pp.257-329
  10. Rosslenbroich, H. J. and D. Stuebler (2000) Botrytis cinerea-history of chemical control and novel fungicides for its management, Crop Prot. 19:557-561 https://doi.org/10.1016/S0261-2194(00)00072-7
  11. Sung, N. D. and M. K. Soung (1999) Phenyl substituent effect on the fungicidal activity of N-phenylthionocarbamate derivatives, Korean J. Pesticide Sci. 3:29-36
  12. Sung, N. D., K. H. Park, S. C. Jang and M. K. Soung (2007) 3-QSAR Analysis on the Fungicidal Activity of N-phenyl-O-phenylthionocarbamate Analogues against Gray Mold (Botrytis cinerea), Korean J. Pesticide Sci. 11:59-66
  13. Tripos Associates, Inc., 1699 S. Hanley Road, Suite 303, St. Louis, Mo. 63144-2913, U.S.A