Development of a Virus Concentration Method and its Application for the Detection of Noroviruses in Drinking Water in China

  • Liu, Junyi (Wuhan Institute of Virology, Chinese Academy of Science) ;
  • Wu, Qingping (Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology) ;
  • Kou, Xiaoxia (Wuhan Institute of Virology, Chinese Academy of Science)
  • 발행 : 2007.02.22

초록

A new procedure for the concentration of nonoviruses from water samples has been developed. This procedure (calcium flocculation-citrate dissolution method) uses the following steps: virus flocculation formed by treatment with 1 M $CaCl_2$ and 1 M $Na_2HPO_4$, virus release by sodium citrate dissolution (0.3 M Na citrate, pH 3.5), and virus re-concentration by ultrafiltration. When reverse transcription (RT)-PCR was performed after the procedure, the overall detection sensitivity for seeded noroviruses in a one liter drinking water sample was as low as 1 RT-PCR unit, which is equal to a $10^{-6}$ dilution of the virus sample. This approach showed at least a 5-fold-higher sensitivity than the current method with its three steps of adsorption-elution-concentration. The newly developed procedure was used to test different brands of bottled drinking water from China for putative contamination with noroviruses. A total of 144 samples were analyzed; all of the samples were negative for norovirus specific nucleic acids.

키워드

참고문헌

  1. Abbaszadegan, M., M.S. Huber, C.P. Gerba, and I.L. Pepper. 1993. Detection of enterovirus in groundwater with the PCR. Appl. Environ. Microbiol. 59, 1318-1324
  2. Afliger, D., M. Gilgen, J. Luthy, and P. Hubner. 1997. Seminested RT-PCR systems for small round structured viruses and detection of enteric viruses in seafood. Intl. J. Food Microbiol. 37, 27-36 https://doi.org/10.1016/S0168-1605(97)00041-X
  3. Ando, T., J.S. Noel, and R.L. Fankhauser. 2000. Genetic classification of 'Norwalk-like viruses'. J. Infect. Dis. 181, S336-S338 https://doi.org/10.1086/315589
  4. Beuret, C. 2003. A simple method for isolation of enteric viruses (noroviruses and enteroviruses) in water. J. Virol. Methods 107, 1-8 https://doi.org/10.1016/S0166-0934(02)00194-5
  5. Beuret, C., D. Kohler, A. Baumgartner, and T.M. Luthi. 2002. Norwalk-like virus sequences in mineral waters: one-year monitoring of three brands. Appl. Environ. Microbiol. 68, 1925-1931 https://doi.org/10.1128/AEM.68.4.1925-1931.2002
  6. Beuret, C., D. Kohler, and T. Luthi. 2000. Norwalk-like viruses sequences detected by reverse transcription-polymerase chain reaction in mineral waters imported into or bottled in Switzerland. J. Food Prot. 63, 1576-1582 https://doi.org/10.4315/0362-028X-63.11.1576
  7. Borchardt, M.K., P.D. Bertz, S.K. Spencer, and D.A. Battigelli. 2003. Incidence of enteric viruses in groundwater from household wells in Wisconsin. Appl. Environ. Microbiol. 69, 1172-1180 https://doi.org/10.1128/AEM.69.2.1172-1180.2003
  8. Fang, Z., L. Wen, S. Jin, Z. Zhao, C. Moe, H. Yoshikura, and R. Glass. 1995. Norwalk-like virus infection found in diarrhea patients in China. Chinese J. Virol. 11, 215-219
  9. Gassilloud, B., L. Schwartzbrod, and C. Gantzer. 2003. Presence of viral genomes in mineral water: a sufficient condition to assume infectious risk? Appl. Environ. Microbiol. 69, 3965-3969 https://doi.org/10.1128/AEM.69.7.3965-3969.2003
  10. Gilgen, M., D. Germann, J. luthy, and P. Hubner. 1997. Three-step isolation method for sensitive detection of enterovirus, rotovirus, hepatitis A virus, and small round structured viruses in water samples. Int. J. Food Microbiol. 37, 189-199 https://doi.org/10.1016/S0168-1605(97)00075-5
  11. Green, J., K. Henshilwood, C.I. Gallimore, D.W.G. Brown, and D.N. Lees. 1998. A nested reverse transcriptase PCR assay for detection of small round-structured viruses in environmentally contaminated molluscan shellfish. Appl. Environ. Microbiol. 64, 858-863
  12. Haefliger, D., P. Huebner, and J. Luthy. 2000. Outbreak of viral gastroenteritis due to sewage-contaminated drinking water. Int. J. Food Microbiol. 54, 123-126 https://doi.org/10.1016/S0168-1605(99)00176-2
  13. Haramoto, E., H. Katayama, and S. Ohgaki. 2004. Detection of noroviruses in tap water in Japan by means of a new method for concentration enteric viruses in large volumes of freshwater. Appl. Environ. Microbiol. 70, 2154-2160 https://doi.org/10.1128/AEM.70.4.2154-2160.2004
  14. Ijzerman, M.M., D.R. Dahling, and G.S. Fout. 1997. A method to remove environmental inhibitors prior to the detection of waterborne enteric viruses by reverse transcriptase-PCR. J. Virol. Methods 63, 145-153 https://doi.org/10.1016/S0166-0934(96)02123-4
  15. Katayama, H., A. Shimasaki, and S. Ohgaki. 2002. Development of a virus concentration method and its application to detection of enterovirus and Norwalk virus from coastal seawater. Appl. Environ. Microbiol. 68, 1033-1039 https://doi.org/10.1128/AEM.68.3.1033-1039.2002
  16. Koopmans, M., C. Bonsdorff, J. Vinje, D. Medici, and S. Monroe. 2002. Foodborne viruses. FEMS Microbiol. Reviews 26, 187-205 https://doi.org/10.1111/j.1574-6976.2002.tb00610.x
  17. Lamothe, G.T., T. Putallaz, H. Joosten, and J.D. Marugg. 2003. Reverse Transcription-PCR analysis of bottled and natural mineral waters for the presence of noroviruses. Appl. Environ. Microbiol. 69, 6541-6549 https://doi.org/10.1128/AEM.69.11.6541-6549.2003
  18. Pang, X.L., J.K. Preiksaitis, and B. Lee. 2005. Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis. J. Clin. Virol. 33, 168-171 https://doi.org/10.1016/j.jcv.2004.12.014
  19. Parshionikar, S.U., S. Willian-True, G.S. Fout, D.E. Robbins, S.A. Seys, J.D. Cassady, and R. Harris. 2003. Waterborne outbreak of gastroenteritis associated with a norovirus. Appl. Environ. Microbiol. 69, 5263-5268 https://doi.org/10.1128/AEM.69.9.5263-5268.2003
  20. Sair, A.I., D.H. D'Souza, C.L. Moe, and L. Jaykus. 2002. Improved detection of human enteric virus in foods by RT-PCR. J. Virol. Methods 100, 57-69 https://doi.org/10.1016/S0166-0934(01)00397-4
  21. Schwab, K.J., F.H. Neill, M.K. Estes, and R.L. Atmar. 1998. Improvements in the RT-PCR detection of enteric viruses in environmental samples. Wat. Sci. Tech. 38, 83-86
  22. Sobsey, M.D. and B.L. Jones. 1979. Concentration of poliovirus from tap water using positively charged microporous filters. Appl. Environ. Microbiol. 37, 588-595
  23. Sobsey, M.D. and J. Glass. 1980. Poliovirus concentration from tap water with electropositive adsorbent filters. Appl. Environ. Microbiol. 40, 201
  24. Vinje, J., H. Vennema, L. Maunula, C.H. von Bonsdorff, M. Hoehne, E. Schreier, A. Richards, J. Green, D. Brown, S.S. Beard, S.S. Monroe, E. de Bruin, L. Svensson, and M.P. Koopmans. 2003. International collaborative study to compare reverse transcriptase PCR assays for detection and genotyping of noroviruses. J. Clin. Microbiol. 41, 1423-1433 https://doi.org/10.1128/JCM.41.4.1423-1433.2003
  25. Vinje, J. and M.P.G. Koopmans. 2000. Simultaneous detection and genotyping of 'Norwalk-Like Viruses' by oligonucleotide array in a reverse line blot hybridization format. J. Clin. Microbiol. 38, 2595-2601
  26. Zheng, D.P., T. Ando, R.L. Frankhauser, R.S. Beard, R.I. Glass, and S.S. Monroe. 2006. Norovirus classification and proposed strain nomenclature. Virology 346, 312-323 https://doi.org/10.1016/j.virol.2005.11.015