References
- Akaike H (1974) A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19: 716−723 https://doi.org/10.1109/TAC.1974.1100705
- Alam MT, Bora H, Das MK and Sharma YD (2008) The type and mysorensis forms of the Anopheles stephensi (Diptera: Culicidae) in India exhibit identical ribosomal DNA ITS2 and domain-3 sequences. Parasitol. Res. 103: 75−80 https://doi.org/10.1007/s00436-008-0930-7
- Arnheim N (1983) Concerted evolution of multigene families, Evolution of Genes and Proteins. Nei M. and Koehn R.K., eds., Sinauer, Sunderland, MA, pp. 38−61
- Beebe NW, Ellis JT, Cooper RD and Saul A (1999) DNA sequence analysis of the ribosomal DNA ITS2 region for the Anopheles punctulatus group of mosquitoes. Insect Mol. Biol. 8: 381−390 https://doi.org/10.1046/j.1365-2583.1999.83127.x
- Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573−580 https://doi.org/10.1093/nar/27.2.573
- Boileau P, Walch G and Liotard JP (1992) Radiocinematographic study of active elevation of the prosthetic shoulder. Rev. Chir. Orthop. Reparatrice Appar. Mot. 78: 355−364
- Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic tool. Curr. Opin. Genet. Dev. 8: 669−674
- Chapman RE and Bourke AFG (2001) The influence of sociality on the conservation biology of social insects. Ecol. Letters 4: 650−662 https://doi.org/10.1046/j.1461-0248.2001.00253.x
- Collins FH and Paskewitz S (1996) A review of the use of ribosomal DNA (rDNA) to differentiate among cryptic Anopheles species. Insect Mol. Biol. 5: 1−9 https://doi.org/10.1111/j.1365-2583.1996.tb00034.x
- Corbet SA, Williams IH and Osborne JL (1991) Bees and the pollination of crops and wild flowers in the European Community. Bee World 72: 47−59 https://doi.org/10.1080/0005772X.1991.11099079
- Darvill B, Ellis JS, Lye GC and Goulson D (2006) Population structure and inbreeding in a rare and declining bumblebee, Bombus muscorum, (Hymenoptera: Apidae). Mol. Ecol. 15: 601−611 https://doi.org/10.1111/j.1365-294X.2006.02797.x
- De la Rua P, de May-Itza JW, Serrano J and Quezada- Euan JJG (2007) Sequence and RFLP analysis of the ITS2 ribosomal DNA in two Neotropical social bees, Melipona beecheii and Melipona yucatanica (Apidae, Meliponini). Insectes Sociaux 54: 418−423 https://doi.org/10.1007/s00040-007-0962-5
- Ellis JS, Knight ME, Darvill B and Goulson D (2006) Extremely low effective population sizes, genetic structuring and reduced genetic diversity in a threatened bumblebee species, Bombus sylvarum (Hymenoptera: Apidae). Mol. Ecol. 15: 4375−4386 https://doi.org/10.1111/j.1365-294X.2006.03121.x
- Estoup A, Solingac M, Cornuet JM, Goudet J and Scholl A (1996) Genetic differentiation of continental and island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe. Mol. Ecol. 5: 19−31 https://doi.org/10.1111/j.1365-294X.1996.tb00288.x
- Excoffier L, Laval G and Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47−50
- Excoffier L, Smouse PE and Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479−491
- Frankham R (1996) Conservation Genetics. Ann. Rev. Genet. 29: 305−327 https://doi.org/10.1146/annurev.ge.29.120195.001513
- Fritz GN, Conn J, Cockburn A and Seawright J (1994) Sequence analysis of ribosomal DNA internal transcribed spacer 2 from populations of Anopheles nunezyovari (Diptera: Culicidae). Mol. Biol. Evol. 11: 406−416
- Gomez-Zurita J, Juan C and Petitpierre E (2000) Sequence, secondary structure and phylogenetic analyses of the ribosomal internal transcribed spacer 2 (ITS2) in the Timarcha leaf beetles (Coleoptera: Chrysomelidae). Insect Mol. Biol. 9:591−604 https://doi.org/10.1046/j.1365-2583.2000.00223.x
- Hackett BJ, Gimnig J, Guelbeogo W, Constantini C, Koekemoer LL, Coetzee M, Collins FH and Besansky NJ (2000) Ribosomal DNA internal transcribed spacer (ITS2) sequences differenciate Anopheles funestus and A. rivulorum, and uncover a cryptic taxon. Insect Mol. Biol. 9: 369−374 https://doi.org/10.1046/j.1365-2583.2000.00198.x
- Hartl DL and Clark AG (1989) Principles of Population Genetics. Sinauer Associates, Inc., Sunderland, MA
- Huelsenbeck JP and Ronquist F (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754−755 https://doi.org/10.1093/bioinformatics/17.8.754
- Ji Y, Zhang D and He L (2003) Evolutionary conservation and versatility of a new set of primers for amplifying the ribosomal internal transcribed spacer regions in insects and other invertebrates. Mol. Ecol. Notes 3: 581−585 https://doi.org/10.1046/j.1471-8286.2003.00519.x
- Katoh K, Misawa K, Kuma K and Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30: 3059−3066 https://doi.org/10.1093/nar/gkf436
-
Keller A, Schleicher T, Schultz J, M
$\ddot{u}$ ller T, Dandekar T and Wolf M (2009) 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene 430: 50−57 https://doi.org/10.1016/j.gene.2008.10.012 - Kim MJ, Yoon HJ, Im HH, Jeong HU, Kim MI, Kim SR and Kim I (2009) Mitocondrial DNA sequence variation of the bomblebee, Bombus ardens (Hymenoptera: Apidae). J. Asia-Pacific Entomol. 12: 133−139 https://doi.org/10.1016/j.aspen.2009.02.003
- Kimura M (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111−120 https://doi.org/10.1007/BF01731581
- Marcilla A, Bargues MD, Ramsey JM, Magallon- Gastelum E, Salazar-Schettino PM, Abad-Franch F, Dujardin JP, Schofield CJ and Mas-Coma S (2001) The ITS-2 of the nuclear rDNA as a molecular marker for populations, species and phylogenetic relationships in Triatominae (Hemiptera: Reduviidae), vectors of Chagas disease. Mol. Phyl. Evol. 18: 136-142 https://doi.org/10.1006/mpev.2000.0864
- Marinucci M, Romi R, Mancini P, Di Luca M and Severini C (1999) Phylogenetic relationships of seven palearctic members of the maculipennis complex inferred from ITS2 sequence analysis. Insect Mol. Biol. 8: 469−480 https://doi.org/10.1046/j.1365-2583.1999.00140.x
- Mikkola K (1978) Spring migrations of wasps and bumble bees on southern coast of Finland (Hymenoptera Vespidae and Apidae). Ann. Entomol. Fennici 44: 10−26
- Miller BR, Crabtree MB and Savage H (1996) Phylogeny of fourteen Culex mosquito species including the Culex pipines complex, inferred from the internal transcribed spacer of ribosomal DNA. Insect Mol. Biol. 5: 93−107 https://doi.org/10.1111/j.1365-2583.1996.tb00044.x
- Mukabayire O, Boccolini D, Lochouarn L, Fontenille D and Besansky NJ (1999) Mitochondrial and ribosomal internal transcribed spacer (ITS2) diversity of the African malaria vector Anopheles funestus. Mol. Ecol. 8: 289−297 https://doi.org/10.1046/j.1365-294X.1999.00567.x
- Posada D and Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817−818 https://doi.org/10.1093/bioinformatics/14.9.817
-
Swofford DL (2002)
$PAUP^*$ Phylogenetic Analysis Using Parsimony ($ Other Method) ver. 4.10., Sunderland. MA: Sinauer Associates$^*and $ $ - Vobis M, Haese JD, Mehlhorn H, Mencke N, Blagburn BL, Bond R, Denholm I, Dryden MW, Payne P, Rust MK, Schroeder I, Vaughn MB and Bledsoe D (2004) Molecular phylogeny of isolates of Ctenocephalides felis and related species based on analysis of ITS1, ITS2 and mitochondrial 16S rDNA sequences and random binding primers. Parasitol. Res. 94: 219−226 https://doi.org/10.1007/s00436-004-1201-x
- Vogler AP and De Salle R (1994) Evolutionary and phylogenetic information content of the ITS1 region in the tiger beetle Cicindela dorsilas. Mol. Biol. Evol. 11: 393−405
- Weekers PHH, De Jonckheere JH and Dumont JH (2001) Phylogenetic relationships inferred from ribosomal ITS sequences and biogeographic patterns in representatives of the genus Calopteryx (Insecta: Odonata) of the West Mediterranean and adjacent West European zone. Mol. Phyl. Evol. 20: 89−99 https://doi.org/10.1006/mpev.2001.0947
- Widmer A and Schmid-Hempel P (1999) The population genetic structure of a large temperate pollinator species Bombus pascuorum (Scopoli) (Hymenoptera:Apidae). Mol. Ecol. 8: 387−398 https://doi.org/10.1046/j.1365-294X.1999.00584.x
- Williams PH (1994) Phyolgenetic relationships among bumblebees (Bombus Latr.): a reappraisal of morphological evidence. Syst. Entomol. 19: 327−244 https://doi.org/10.1111/j.1365-3113.1994.tb00594.x
- Worheide G, Hooper JN and Degnan MB (2002) Phylogeography of western pacific Leucetta 'chagosensis' (Porifera: Calcarea) from ribosomal DNA sequences: implications for populations history and conservation of the Great Barrier Reef World Heritage Area (Australia). Mol. Ecol. 11: 1753−1768 https://doi.org/10.1046/j.1365-294X.2002.01570.x