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A multiplex real-time PCR for differential detection and quantification of Salmonella spp., Salmonella enterica serovar Typhimurium and Enteritidis in meats

Lee, Su-Hwa;Jung, Byeong-Yeal;Rayamahji, Nabin;Lee, Hee-Soo;Jeon, Woo-Jin;Choi, Kang-Seuk;Kweon, Chang-Hee;Yoo, Han-Sang

  • Published : 20090300

Abstract

Salmonella (S.) Typhimurium and S. Enteritidis are the major causative agents of food-borne illnesses worldwide. Currently, a rapid detection system using multiplex real-time polymerase chain reaction (PCR) has been applied for other food-borne pathogens such as Escherichia coli, Staphylococcus aureus and Streptococcus spp. A multiplex real-time PCR was developed for the simultaneous detection of Salmonella spp., especially S. Typhimurium and S. Enteritidis, in beef and pork. For the specific and sensitive multiplex real-time PCR, three representative primers and probes were designed based on sequence data from Genbank. Among the three DNA extraction methods (boiling, alkaline lysis, and QIAamp DNA Mini Kit), the QIAamp DNA Mini Kit was the most sensitive in this study. The optimized multiplex real-time PCR was applied to artificially inoculated beef or pork. The detection sensitivity of the multiplex real-time PCR was increased. The specificity of the multiplex real-time PCR assay, using 128 pure-cultured bacteria including 110 Salmonella isolates and 18 non-Salmonella isolates, was 100%, 100% and 99.1% for Salmonella spp., S. Typhimurium and S. Enteritidis, respectively. The sensitivity was 100%, 100% and 91.7% for Salmonella spp., S. Typhimurium and S. Enteritidis, respectively. The multiplex real-time PCR assay developed in this study could detect up to 0.54 ${\pm}$ 0.09 and 0.65 ${\pm}$ 0.07 $log_{10}$ CFU/ml for S. Typhimurium and S. Enteritidis for beef, 1.45 ${\pm}$ 0.21 and 1.65 ${\pm}$ 0.07 $log_{10}$ CFU/ml for S. Typhimurium and S. Enteritidis for pork, respectively, with all conditions optimized. Our results indicated that the multiplex real-time PCR assay developed in this study could sensitively detect Salmonella spp. and specifically differentiate S. Typhimurium from S. Enteritidis in meats.

Keywords

References

  1. Andrews WH, Hammack TS. Salmonella In: Merker RL (ed.). Bacteriological Analytical Manual. 8th ed. Chapter 5, pp. 5.01-5.20, AOAC International, Gaitherburg, 1998
  2. Baay MF, Huis in't Veld JH. Alternative antigens reduce cross-reactions in an ELISA for the detection of Salmonella enteritidis in poultry. J Appl Bacteriol 1993, 74, 243-247 https://doi.org/10.1111/j.1365-2672.1993.tb03021.x
  3. Barrow PA. Serological diagnosis of Salmonella serotype Enteritidis infections in poultry by ELISA and other tests. Int J Food Microbiol 1994, 21, 55-68 https://doi.org/10.1016/0168-1605(94)90200-3
  4. Bennett AR, Greenwood D, Tennant C, Banks JG, Betts RP. Rapid and definitive detection of Salmonella in foods by PCR. Lett Appl Microbiol 1998, 26, 437-441 https://doi.org/10.1046/j.1472-765X.1998.00368.x
  5. Chiu CH, Ou JT. Rapid identification of Salmonella serovars in feces by specific detection of virulence genes, invA and spvC, by an enrichment broth culture-multiplex PCR combination assay. J Clin Microbiol 1996, 34, 2619-2622
  6. Clouthier SC, Muller KH, Doran JL, Collinson SK, Kay WW. Characterization of three fimbrial genes, sefABC, of Salmonella enteritidis. J Bacteriol 1993, 175, 2523-2533 https://doi.org/10.1128/jb.175.9.2523-2533.1993
  7. De Medici D, Croci L, Delibato E, Di Pasquale S, Filetici E, Toti L. Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype Enteritidis in poultry. Appl Environ Microbiol 2003, 69, 3456-3461 https://doi.org/10.1128/AEM.69.6.3456-3461.2003
  8. Fey A, Eichler S, Flavier S, Christen R, Hofle MG, Guzman CA. Establishment of a real-time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism. Appl Environ Microbiol 2004, 70, 3618-3623 https://doi.org/10.1128/AEM.70.6.3618-3623.2004
  9. Gillespie BE, Oliver SP. Simultaneous detection of mastitis pathogens, Staphylococcus aureus, Streptococcus uberis, and Streptococcus agalactiae by multiplex real-time polymerase chain reaction. J Dairy Sci 2005, 88, 3510-3518 https://doi.org/10.3168/jds.S0022-0302(05)73036-8
  10. Grant MA, Hu J, Jinneman KC. Multiplex real-time PCR detection of heat-labile and heat-stable toxin genes in enterotoxigenic Escherichia coli. J Food Prot 2006, 69, 412-416 https://doi.org/10.4315/0362-028X-69.2.412
  11. Hein I, Flekna G, Krassnig M, Wagner M. Real-time PCR for the detection of Salmonella spp. in food: An alternative approach to a conventional PCR system suggested by the FOOD-PCR project. J Microbiol Methods 2006, 66, 538-547 https://doi.org/10.1016/j.mimet.2006.02.008
  12. Holicka J, Guy RA, Kapoor A, Shepherd D, Horgen PA. A rapid (one day), sensitive real-time polymerase chain reaction assay for detecting Escherichia coli O157:H7 in ground beef. Can J Microbiol 2006, 52, 992-998 https://doi.org/10.1139/W06-057
  13. Imre A, Olasz F, Nagy B. Development of a PCR system for the characterisation of Salmonella flagellin genes. Acta Vet Hung 2005, 53, 163-172 https://doi.org/10.1556/AVet.53.2005.2.2
  14. International Organization for Standardization (ISO). Microbiology of food and animal feeding stuffs. Horizontal method for the detection of Salmonella (ISO 6579:2003). ISO, Geneva, 2003
  15. Kent PT, Thomason BM, Morris GK. Salmonellae in Foods and Feeds. p. 29, USA: Department of Health and Human Services, Atlanta, 1981
  16. Korea Food & Drug Administration (KFDA). Food & Drug Statistical Yearbook. p.142, KFDA, Seoul, 2008
  17. Lin CK, Hung CL, Hsu SC, Tsai CC, Tsen HY. An improved PCR primer pair based on 16S rDNA for the specific detection of Salmonella serovars in food samples. J Food Prot 2004, 67, 1335-1343 https://doi.org/10.4315/0362-028X-67.7.1335
  18. Mackinnon A. A spreadsheet for the calculation of comprehensive statistics for the assessment of diagnostic tests and inter-rater agreement. Comput Biol Med 2000, 30, 127-134 https://doi.org/10.1016/S0010-4825(00)00006-8
  19. Malorny B, Paccassoni E, Fach P, Bunge C, Martin A, Helmuth R. Diagnostic real-time PCR for detection of Salmonella in food. Appl Environ Microbiol 2004, 70, 7046-7052 https://doi.org/10.1128/AEM.70.12.7046-7052.2004
  20. Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, Griffin PM, Tauxe RV. Food-related illness and death in the United States. Emerg Infect Dis 1999, 5, 607-625 https://doi.org/10.3201/eid0505.990502
  21. Miyamoto T, Tian HZ, Okabe T, Trevanich S, Asoh K, Tomoda S, Honjoh K, Hatano S. Application of random amplified polymorphic DNA analysis for detection of Salmonella spp. in foods. J Food Prot 1998, 61, 785-791 https://doi.org/10.4315/0362-028X-61.7.785
  22. Pang T, Bhutta ZA, Finlay BB, Altwegg M. Typhoid fever and other salmonellosis: a continuing challenge. Trends Microbiol 1995, 3, 253-255 https://doi.org/10.1016/S0966-842X(00)88937-4
  23. Quinn C, Ward J, Griffin M, Yearsley D, Egan J. A comparison of conventional culture and three rapid methods for the detection of Salmonella in poultry feeds and environmental samples. Lett Appl Microbiol 1995, 20, 89-91 https://doi.org/10.1111/j.1472-765X.1995.tb01293.x
  24. Rossmanith P, Krassnig M, Wagner M, Hein I. Detection of Listeria monocytogenes in food using a combined enrichment/real-time PCR method targeting the prfA gene. Res Microbiol 2006, 157, 763-771 https://doi.org/10.1016/j.resmic.2006.03.003
  25. Sails AD, Fox AJ, Bolton FJ, Wareing DR, Greenway DL. A real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture. Appl Environ Microbiol 2003, 69, 1383-1390 https://doi.org/10.1128/AEM.69.3.1383-1390.2003
  26. Seo KH, Valentin-Bon IE, Brackett RE. Detection and enumeration of Salmonella Enteritidis in homemade ice cream associated with an outbreak: comparison of conventional and real-time PCR methods. J Food Prot 2006, 69, 639-643 https://doi.org/10.4315/0362-028X-69.3.639
  27. Seo KH, Valentin-Bon IE, Brackett RE, Holt PS. Rapid, specific detection of Salmonella Enteritidis in pooled eggs by real-time PCR. J Food Prot 2004, 67, 864-869 https://doi.org/10.4315/0362-028X-67.5.864
  28. Soumet C, Ermel G, Rose V, Rose N, Drouin P, Salvat G, Colin P. Identification by a multiplex PCR-based assay of Salmonella Typhimurium and Salmonella Enteritidis strains from environmental swabs of poultry houses. Lett Appl Microbiol 1999, 29, 1-6 https://doi.org/10.1046/j.1365-2672.1999.00559.x
  29. Szmolka A, Kaszanyitzky E, Nagy B. Improved diagnostic and real-time PCR in rapid screening for Salmonella in the poultry food chain. Acta Vet Hung 2006, 54, 297-312 https://doi.org/10.1556/AVet.54.2006.3.1
  30. Tan W, Shelef LA. Automated detection of Salmonella spp. in foods. J Microbiol Methods 1999, 37, 87-91 https://doi.org/10.1016/S0167-7012(99)00052-4
  31. Trkov M, Avgustin G. An improved 16S rRNA based PCR method for the specific detection of Salmonella enterica. Int J Food Microbiol 2003, 80, 67-75 https://doi.org/10.1016/S0168-1605(02)00138-1
  32. Wilson MA, Rimler RB, Hoffman LJ. Comparison of DNA fingerprints and somatic serotypes of serogroup B and E Pasteurella multocida isolates. J Clin Microbiol 1992, 30, 1518-1524

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