DOI QR코드

DOI QR Code

Microbial Diversity and Community Analysis in Lettuce or Cucumber Cultivated Greenhouse Soil in Korea

상추 및 오이 시설재배 토양의 미생물 다양성 분석

  • Kim, Byung-Yong (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) ;
  • Weon, Hang-Yeon (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) ;
  • Park, In-Cheol (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) ;
  • Lee, Sang-Yeob (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) ;
  • Kim, Wan-Gyu (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) ;
  • Song, Jae-Kyeong (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration)
  • 김병용 (국립농업과학원 농업미생물팀) ;
  • 원항연 (국립농업과학원 농업미생물팀) ;
  • 박인철 (국립농업과학원 농업미생물팀) ;
  • 이상엽 (국립농업과학원 농업미생물팀) ;
  • 김완규 (국립농업과학원 농업미생물팀) ;
  • 송재경 (국립농업과학원 농업미생물팀)
  • Received : 2011.11.20
  • Accepted : 2011.12.02
  • Published : 2011.12.31

Abstract

The soil chemical properties, microbial community structures and biochemical properties of lettuce or cucumber-cultivated greenhouse soil samples were analyzed to assess soil health and characterize microbial distribution in 8 locations in Korea. Although most of chemical properties were within the soil management guidelines, the available phosphate, and the contents of exchangeable potassium and calcium were higher than those of recommended levels. In the culture-dependent analysis, 841 bacterial strains were isolated from the greenhouse soils and were identified at the genus level by 16S rRNA gene sequences analysis. The dominant bacterial genera were Bacillus (35.7%), Microbacterium (9.3%), Arthrobacter (5.7%) and Lysobacter (5.1%). The abundance of pseudomonads was highly variable depending on the soil samples. In the culture-independent analysis, soil microbial community was investigated by using phospholipid fatty acid (PLFA) method. Principal component analysis (PCA) showed that a specific grouping for microbial community structure in the greenhouse soils was not observed based on cultivated crops and investigated sites. The results revealed that the greenhouses soils examined are relatively sound managed in terms of soil chemical contents and microbial properties.

시설재배지의 토양미생물 분포 특성을 밝히고 토양의 건전성을 평가하고자, 전국 주요 시설재배 8개 주산단지에서 각각 5포장을 선정하여 토양화학성, 미생물분포 및 생화학적 특성을 조사하였다. 토양화학성은 가용성인산, 칼륨, 칼슘의 함량이 적정범위보다 크게 상회하여 상당량의 염류 집적을 확인하였다. 토양미생물의 배양적 방법을 통해 조사한 시설재배지의 주요 우점 박테리아는 Bacillus 속, Microbacterium 속, Arthrobacter 속, Lysobacter 속 등이었으며, 형광성 Pseudomonas 속의 밀도는 상추와 오이 재배지에서 각각 $0.018-7.3{\times}10^4\;cfu\;g^{-1}$, $0.0013-9.6{\times}10^4\;cfu\;g^{-1}$으로 시료에 따라 큰 변이를 보였다. 비배양학적 방법을 통한 토양미생물 분포 조사를 위해 수행한 인지질지방산 (PLFA)의 주성분 분석 결과, 작물 및 지역별 군집구조의 큰 차이는 없었다. 따라서 토양화학성 및 미생물군집구조 측면에서 시설재배지 조사지역의 토양은 대체로 건전한 것으로 판단된다.

Keywords

References

  1. Aciego Pietri, J.C. and P.C. Brookes. 2008. Relationships between soil pH and microbial properties in a UK arable soil. Soil Biol. Biochem. 40:1856-1861. https://doi.org/10.1016/j.soilbio.2008.03.020
  2. Baath, E. 1996. Adaptation of soil bacterial communities to prevailing pH in different soils. FEMS Microbiol. Ecol. 19:227-237. https://doi.org/10.1111/j.1574-6941.1996.tb00215.x
  3. Bligh, E.G. and W.J. Dyer. 1959. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37:911-917. https://doi.org/10.1139/o59-099
  4. Bossio, D.A., K.M. Scow, N. Gunapala, and K.J. Graham. 1998. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microb. Ecol. 36:1-12. https://doi.org/10.1007/s002489900087
  5. Brant, J.B., E.W. Sulzman, and D.D. Myrold. 2006. Microbial community utilization of added carbon substrates in response to long-term carbon input manipulation. Soil Biol. Biochem. 38:2219-2232. https://doi.org/10.1016/j.soilbio.2006.01.022
  6. Casida Jr, L.E. 1977. Microbial metabolic activity in soil as measured by dehydrogenase determinations. Appl. Environ. Microbiol. 34:630-636.
  7. Cho, K.R., C.S. Kang, T.J. Won, and K.Y. Park. 2006. Effects of compressed expansion rice hull application and drip irrigation on the alleviation of salt accumulation in the plastic film house soil. Korean J. Soil Sci. Fert. 39: 372-379.
  8. Fauci, M.F. and R.P. Dick. 1994. Soil microbial dynamics: short-and long-term effects of inorganic and organic nitrogen. Soil Sci. Soc. Am. J. 58:801-806. https://doi.org/10.2136/sssaj1994.03615995005800030023x
  9. Fernandez-Calvino, D., J. Rousk, P.C. Brookes, and E. Baath. 2011. Bacterial pH-optima for growth track soil pH, but are higher than expected at low pH. Soil Biol. Biochem. 43:1569-1575. https://doi.org/10.1016/j.soilbio.2011.04.007
  10. Fernandez‐Calvino, D. and E. Baath. 2006. Growth response of the bacterial community to pH in soils differing in pH. FEMS Microbiol. Ecol. 73:149-156.
  11. Garbeva, P., J.A. Van Veen, and J.D. Van Elsas. 2003. Predominant Bacillus spp. in agricultural soil under different management regimes detected via PCR-DGGE. Microb. Ecol. 45:302-316. https://doi.org/10.1007/s00248-002-2034-8
  12. Hirsch, P.R., T.H. Mauchline, and I.M. Clark. 2010. Cultureindependent molecular techniques for soil microbial ecology. Soil Biol. Biochem. 42:878-887. https://doi.org/10.1016/j.soilbio.2010.02.019
  13. Kwak, H.K., K.S. Seong, N.J. Lee, S.B. Lee, M.S. Han, and K.A. Roh. 2003. Changes in chemical properties and fauna of plastic film house soil by application of chemical fertilizer and composted pig manure. Korean J. Soil Sci. Fert. 36:304-310.
  14. Lauber, C.L., M. Hamady, R. Knight, and N. Fierer. 2009. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microbiol. 75:5111. https://doi.org/10.1128/AEM.00335-09
  15. Lee, Y.H. and S.K. Ha. 2011. Impacts of chemical properties on microbial population from upland soils in Gyeongnam province. Korean J. Soil Sci. Fert. 43:572-577.
  16. McGill, W.B., K.R. Cannon, J.A. Robertson, and F.D. Cook. 1986. Dynamics of soil microbial biomass and water-soluble organic C in Breton L after 50 years of cropping to two rotations. Can. J. Soil Sci. 66:1-19. https://doi.org/10.4141/cjss86-001
  17. McSpadden Gardener, B.B. 2004. Ecology of Bacillus and Paenibacillus spp. in agricultural systems. Phytopathology 94:1252-1258. https://doi.org/10.1094/PHYTO.2004.94.11.1252
  18. Nacke, H., A. Thurmer, A. Wollherr, C. Will, L. Hodac, N. Herold, et al. 2011. Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS ONE 6:e17000. https://doi.org/10.1371/journal.pone.0017000
  19. NIAST. 2000. Method of analysis of soil and plant. National Institute of Agricultural Science and Technology, Suwon, Korea.
  20. Rousk, J., E. Baath, P.C. Brookes, C.L. Lauber, C. Lozupone, J.G. Caporaso, et al. 2010. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340-1351. https://doi.org/10.1038/ismej.2010.58
  21. Song, J., H.Y. Weon, S.H. Yoon, D.S. Park, S.J. Go, and J.W. Suh. 2001. Phylogenetic diversity of thermophilic actinomycetes and Thermoactinomyces spp. isolated from mushroom composts in Korea based on 16S rRNA gene sequence analysis. FEMS Microbiol. Lett. 202:97-102. https://doi.org/10.1111/j.1574-6968.2001.tb10786.x
  22. Suh, J.S., B.G. Jung, and J.S. Kwon. 1998. Soil microbial diversity of the plastic film house fields in Korea. Korean J. Soil Sci. Fert. 31:197-203.
  23. Zelles, L., Q.Y. Bai, R. Rackwitz, D. Chadwick, and F. Beese. 1995. Determination of phospholipid-and lipopolysaccharidederived fatty acids as an estimate of microbial biomass and community structures in soils. Biol. Fertil. Soils 19:115-123. https://doi.org/10.1007/BF00336146

Cited by

  1. Effect of Bacillus subtilis S37-2 on Microorganisms in Soil and Growth of Lettuce (Lactuca sativa) vol.49, pp.5, 2016, https://doi.org/10.7745/KJSSF.2016.49.5.621
  2. Microbiological Hazard Analysis of Ginseng Farms at the Cultivation Stage to Develop a Good Agricultural Practices (GAP) Model vol.28, pp.4, 2013, https://doi.org/10.13103/JFHS.2013.28.4.312
  3. An Investigation of the Hazards Associated with Cucumber and Hot Pepper Cultivation Areas to Establish a Good Agricultural Practices (GAP) Model vol.46, pp.1, 2014, https://doi.org/10.9721/KJFST.2014.46.1.108
  4. Investigation of Hazards from Onions and Their Cultivation Areas to Establish a Good Agricultural Practices (GAP) Model vol.45, pp.6, 2013, https://doi.org/10.9721/KJFST.2013.45.6.785
  5. Effect of Aerated Compost Tea on the Growth Promotion of Lettuce, Soybean, and Sweet Corn in Organic Cultivation vol.31, pp.3, 2015, https://doi.org/10.5423/PPJ.OA.02.2015.0024
  6. Investigation of Microbial Contamination in Liriope platyphylla at Post Harvest Environments vol.31, pp.2, 2016, https://doi.org/10.13103/JFHS.2016.31.2.99
  7. Relationship between Chemical Property and Microbial Activity of Reclaimed Tidal Lands at Western Coast Area in Korea vol.47, pp.4, 2014, https://doi.org/10.7745/KJSSF.2014.47.4.254
  8. Relation between Chemical Properties and Microbial Activities in Soils from Reclaimed Tidal Lands at South-western Coast Area in Korea vol.48, pp.4, 2015, https://doi.org/10.7745/KJSSF.2015.48.4.262
  9. Importance of Soil Temperature for the Growth of Temperate Crops under a Tropical Climate and Functional Role of Soil Microbial Diversity vol.33, pp.2, 2018, https://doi.org/10.1264/jsme2.ME17181